Stem-loop nbr-mir-24a-1

Accession

MI0034417

Description

Neolamprologus brichardi nbr-mir-24a-1 precursor miRNA

Sequence

14706 reads, 828.0 reads per million, 7 experiments

UGCCUACUGAGCUGAUAAUCAGUccuacagaaucacUGGCUCAGUUCAGCAGGAACAG
..(((.(((((((((...(((((...........))))).))))))))).))).....

Structure

---UG   A         UAA     ccua 
     CCU CUGAGCUGA   UCAGU    c
     ||| |||||||||   |||||    a
     GGA GACUUGACU   GGUca    g
GACAA   C         --C     cuaa 

Annotation confidence Not enough data

Genome context

JH422289.1: 3784943-3785000 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-24a-1

Mature nbr-miR-24a-1-5p

• Accession: MIMAT0060195
• Description: Neolamprologus brichardi nbr-miR-24a-1-5p mature miRNA
• Sequence: 1 - UGCCUACUGAGCUGAUAAUCAGU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-24a-3p

• Accession: MIMAT0042559
• Description: Neolamprologus brichardi nbr-miR-24a-3p mature miRNA
• Sequence: 37 - UGGCUCAGUUCAGCAGGAACAG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381