Stem-loop nbr-mir-22c

Accession

MI0034419

Description

Neolamprologus brichardi nbr-mir-22c precursor miRNA

Sequence

1092 reads, 64.0 reads per million, 7 experiments

CGUUCUUCACUGGCUAGCUUUAugucccacgccccacacuaAAGCUGCCAGUUGAAGAGCUGU
.(((((((((((((.((((((((((..........))).)))))))))))).))))))))...

Structure

--C        -     U       -   ccca 
   GUUCUUCA CUGGC AGCUUUA ugu    c
   |||||||| ||||| ||||||| |||     
   CGAGAAGU GACCG UCGAAau aca    g
UGU        U     -       c   cccc 

Annotation confidence High

Genome context

JH422279.1: 4341492-4341554 [+]

Mature nbr-miR-22c-5p

• Accession: MIMAT0060197
• Description: Neolamprologus brichardi nbr-miR-22c-5p mature miRNA
• Sequence: 1 - CGUUCUUCACUGGCUAGCUUUA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-22c-3p

• Accession: MIMAT0042561
• Description: Neolamprologus brichardi nbr-miR-22c-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGUUGAAGAGCUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381