Stem-loop nbr-mir-214-2

Accession

MI0034436

Description

Neolamprologus brichardi nbr-mir-214-2 precursor miRNA

Sequence

24992 reads, 1492.0 reads per million, 7 experiments

ugccuaucuacacuugcugugcAGAAUAUCCUCCAACCUGUACAGCAGGCACAGACAGGCAGa
(((((.(((...((((((((((((.............))))))))))))...))).)))))..

Structure

--     a   aca            AAUAU 
  ugccu ucu   cuugcugugcAG     C
  ||||| |||   ||||||||||||     C
  ACGGA AGA   GGACGACAUGUC     U
aG     C   CAC            CAACC 

Annotation confidence Not enough data

Genome context

JH422283.1: 9845272-9845334 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-214-2

Mature nbr-miR-214-2-5p

• Accession: MIMAT0061610
• Description: Neolamprologus brichardi nbr-miR-214-2-5p mature miRNA
• Sequence: 23 - AGAAUAUCCUCCAACCUGUA - 42
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-214-2-3p

• Accession: MIMAT0042510
• Description: Neolamprologus brichardi nbr-miR-214-2-3p mature miRNA
• Sequence: 42 - ACAGCAGGCACAGACAGGCAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381