Stem-loop nbr-mir-22b

Accession

MI0034438

Description

Neolamprologus brichardi nbr-mir-22b precursor miRNA

Sequence

178163 reads, 10152.0 reads per million, 7 experiments

AGUUCUUCACUGGCAAGCUUUAuguuucuguacacaugcuaAAGCUGCCAGCUGAAGAACU
(((((((((((((((.((((((.((............)))))))))))))).)))))))))

Structure

         -      A      u  uucug 
AGUUCUUCA CUGGCA GCUUUA gu     u
||||||||| |||||| |||||| ||      
UCAAGAAGU GACCGU CGAAau cg     a
         C      -      -  uacac 

Annotation confidence High

Genome context

JH422280.1: 558938-558998 [+]

Mature nbr-miR-22b-5p

• Accession: MIMAT0060211
• Description: Neolamprologus brichardi nbr-miR-22b-5p mature miRNA
• Sequence: 1 - AGUUCUUCACUGGCAAGCUUUA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-22b-3p

• Accession: MIMAT0042576
• Description: Neolamprologus brichardi nbr-miR-22b-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGCUGAAGAACU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381