Stem-loop nbr-mir-138-3

Accession

MI0034439

Description

Neolamprologus brichardi nbr-mir-138-3 precursor miRNA

Sequence

1537 reads, 97.0 reads per million, 7 experiments

AGCUGGUGUUGUGAAUCAGGCCGccacaguccagggaccgGCUACUUCCCAACACCAGGGUc
..(((((((((.(((...(((((((.(......)))..)))))..))).)))))))))....

Structure

--AG         U   UCA     --  a ag 
    CUGGUGUUG GAA   GGCCG  cc c  u
    ||||||||| |||   |||||  || |   
    GACCACAAC CUU   UCGgc  gg g  c
cUGG         C   -CA     ca  - ac 

Annotation confidence High

Genome context

JH422309.1: 1827068-1827129 [-]

Mature nbr-miR-138-5p

• Accession: MIMAT0042529
• Description: Neolamprologus brichardi nbr-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-138-3-3p

• Accession: MIMAT0060168
• Description: Neolamprologus brichardi nbr-miR-138-3-3p mature miRNA
• Sequence: 41 - GCUACUUCCCAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381