Stem-loop nbr-mir-219c-2

Accession

MI0034452

Description

Neolamprologus brichardi nbr-mir-219c-2 precursor miRNA

Sequence

5494 reads, 346.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUguauuuaauauccauauccaGGAGUUGUGGCUGGACAUCAUG
((((.(((((..(((((((((((.((...........)).)))))))))))..)))))))))..

Structure

--    U     AA           u  uuaa 
  UGAU GUCCA  CGCAAUUCUUg au    u
  |||| |||||  ||||||||||| ||    a
  ACUA CAGGU  GUGUUGAGGac ua    u
GU    -     CG           c  uacc 

Annotation confidence High

Genome context

JH422352.1: 2245209-2245272 [+]

Mature nbr-miR-219c-5p

• Accession: MIMAT0042569
• Description: Neolamprologus brichardi nbr-miR-219c-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-219c-2-3p

• Accession: MIMAT0060205
• Description: Neolamprologus brichardi nbr-miR-219c-2-3p mature miRNA
• Sequence: 43 - GGAGUUGUGGCUGGACAUCAUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381