Stem-loop nbr-mir-10c

Accession

MI0034461

Description

Neolamprologus brichardi nbr-mir-10c precursor miRNA

Sequence

191571 reads, 11413.0 reads per million, 7 experiments

UACCCUGUAGAUCCGGAUUUGUguaaaaaucauuaauaaaaucaCAAAUUCGCUUCUAGGGGAGU
...(((.((((..((((((((((...................))))))))))..)))).)))...

Structure

UAC   G    UC          uaaaaauc 
   CCU UAGA  CGGAUUUGUg        a
   ||| ||||  ||||||||||        u
   GGG AUCU  GCUUAAACac        u
UGA   G    UC          uaaaauaa 

Annotation confidence High

Genome context

JH422428.1: 1011575-1011639 [-]

Mature nbr-miR-10c-5p

• Accession: MIMAT0042583
• Description: Neolamprologus brichardi nbr-miR-10c-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAUCCGGAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-10c-3p

• Accession: MIMAT0060220
• Description: Neolamprologus brichardi nbr-miR-10c-3p mature miRNA
• Sequence: 45 - CAAAUUCGCUUCUAGGGGAGU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381