miRBase entry: nbr-mir-301a

Stem-loop nbr-mir-301a


Accession
MI0034469
Description
Neolamprologus brichardi nbr-mir-301a precursor miRNA


Sequence

800 reads, 52.0 reads per million, 7 experiments
cUCUGACUUCAUUGCACUACUGUAucagacaacuagUAGUGCAAUAGUAUUGUCAAAGC
((.((((..((((((((((((((........)).))))))))))).)....)))).)).

Structure
-  C    --UU -           -  Auc 
 cU UGAC    C AUUGCACUACU GU   a
 || ||||    | ||||||||||| ||    
 GA ACUG    G UAACGUGAUga ca   g
C  A    UUAU A           u  aca 


Annotation confidence High
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Genome context
JH422443.1: 448336-448394 [+]

Database links

Mature nbr-miR-301a-5p

Accession MIMAT0060224
Description Neolamprologus brichardi nbr-miR-301a-5p mature miRNA
Sequence 2 - UCUGACUUCAUUGCACUACUGUA - 24
Evidence experimental
Illumina [1]

Mature nbr-miR-301a-3p

Accession MIMAT0042590
Description Neolamprologus brichardi nbr-miR-301a-3p mature miRNA
Sequence 37 - UAGUGCAAUAGUAUUGUCAAAGC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381