Stem-loop nbr-mir-212b

Accession

MI0034499

Description

Neolamprologus brichardi nbr-mir-212b precursor miRNA

Literature search

1 open access papers mention nbr-mir-212b
(1 sentences)

Sequence

1596 reads, 90.0 reads per million, 7 experiments

ACCUUGGCUCUAGACUGCUUACUgcuaaaacuccuccaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((...................))))))))))))).))))).))..

Structure

-A  U     C       C      cuaaaacu 
  CC UGGCU UAGACUG UUACUg        c
  || ||||| ||||||| ||||||        c
  GG ACUGA AUCUGAC AAUgac        u
UC  U     C       -      augaaacc 

Annotation confidence High

Genome context

JH422353.1: 1336977-1337043 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-212b

Mature nbr-miR-212b-5p

• Accession: MIMAT0042620
• Description: Neolamprologus brichardi nbr-miR-212b-5p mature miRNA
• Sequence: 1 - ACCUUGGCUCUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-212b-3p

• Accession: MIMAT0060244
• Description: Neolamprologus brichardi nbr-miR-212b-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381