Stem-loop nbr-mir-219b

Accession

MI0034501

Description

Neolamprologus brichardi nbr-mir-219b precursor miRNA

Sequence

2293 reads, 126.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUgaguaaacucauauucaaccccaAGAAUUGUGUAUGGACAUCUGU
.(((.(((((.((((((((((((....................)))))))))))).))))))))...

Structure

--U   U     A            aguaaacuc 
   GAU GUCCA ACGCAAUUCUUg         a
   ||| ||||| ||||||||||||          
   CUA CAGGU UGUGUUAAGAac         u
UGU   -     A            cccaacuua 

Annotation confidence High

Genome context

JH422311.1: 24828-24894 [+]

Mature nbr-miR-219b-5p

• Accession: MIMAT0060246
• Description: Neolamprologus brichardi nbr-miR-219b-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-219b-3p

• Accession: MIMAT0042622
• Description: Neolamprologus brichardi nbr-miR-219b-3p mature miRNA
• Sequence: 46 - AGAAUUGUGUAUGGACAUCUGU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381