miRBase entry: oni-mir-106

Stem-loop oni-mir-106


Accession
MI0034657
Description
Oreochromis niloticus oni-mir-106 precursor miRNA


Sequence

394436 reads, 469.0 reads per million, 105 experiments
UAAAGUGCUUACAGUGCAGGUAGUgaugauaaucuggccuACUGCAGUGUGAGCACUUCUUUC
..(((((((((((.(((((...(((((....)))..))...))))).))))))))))).....

Structure
---UA           G     GUA  --   g 
     AAGUGCUUACA UGCAG   GU  gau a
     ||||||||||| |||||   ||  |||  
     UUCACGAGUGU ACGUC   cg  cua u
CUUUC           G     Auc  gu   a 


Annotation confidence High
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Genome context
CM001445.1: 9821145-9821207 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from oni-mir-106
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-106-5p

Accession MIMAT0042734
Description Oreochromis niloticus oni-miR-106-5p mature miRNA
Sequence 1 - UAAAGUGCUUACAGUGCAGGUAGU - 24
Evidence experimental
Illumina [1]

Mature oni-miR-106-3p

Accession MIMAT0059418
Description Oreochromis niloticus oni-miR-106-3p mature miRNA
Sequence 41 - ACUGCAGUGUGAGCACUUCUUUC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381