Stem-loop pny-mir-10b

Accession

MI0034792

Description

Pundamilia nyererei pny-mir-10b precursor miRNA

Sequence

636065 reads, 48434.0 reads per million, 7 experiments

UACCCUGUAGAACCGAAUGUGUguggagcugccucagucaCAGAUUGGGUUCUUGGGGAGUc
..(((((.((((((.(((.((((..(((....)))...)))).))).)))))))))))....

Structure

--UA     U      G   G    -ug   c 
    CCCUG AGAACC AAU UGUg   gag u
    ||||| |||||| ||| ||||   |||  
    GGGGU UCUUGG UUA ACac   cuc g
cUGA     -      G   G    uga   c 

Annotation confidence High

Genome context

JH419259.1: 991094-991155 [+]

Mature pny-miR-10b-5p

• Accession: MIMAT0042853
• Description: Pundamilia nyererei pny-miR-10b-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAACCGAAUGUGU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-10b-3p

• Accession: MIMAT0060256
• Description: Pundamilia nyererei pny-miR-10b-3p mature miRNA
• Sequence: 41 - CAGAUUGGGUUCUUGGGGAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381