Stem-loop pny-mir-92-2

Accession

MI0034798

Description

Pundamilia nyererei pny-mir-92-2 precursor miRNA

Sequence

1792395 reads, 156446.0 reads per million, 7 experiments

AGGUGGGGAUCGGUAGCAAUGCUguguuccuccaggUAUUGCACUUGUCCCGGCCUGU
((((.(((((.(((.((((((((..(.....)..))))))))))).))))).))))..

Structure

--    G     C   A        gu u 
  AGGU GGGAU GGU GCAAUGCU  g u
  |||| ||||| ||| ||||||||  | c
  UCCG CCCUG UCA CGUUAUgg  c c
UG    G     U   -        ac u 

Annotation confidence High

Genome context

JH419216.1: 2883136-2883193 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pny-mir-92-2

Mature pny-miR-92-2-5p

• Accession: MIMAT0060261
• Description: Pundamilia nyererei pny-miR-92-2-5p mature miRNA
• Sequence: 1 - AGGUGGGGAUCGGUAGCAAUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-92-3p

• Accession: MIMAT0042857
• Description: Pundamilia nyererei pny-miR-92-3p mature miRNA
• Sequence: 37 - UAUUGCACUUGUCCCGGCCUGU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381