Stem-loop pny-mir-184a

Accession

MI0034801

Description

Pundamilia nyererei pny-mir-184a precursor miRNA

Sequence

471800 reads, 41872.0 reads per million, 7 experiments

CCUUAUCACUUUUCCAGCCCAGCuauagauucuguauccguUGGACGGAGAACUGAUAAGGGC
((((((((.((((((.(.((((((((((...)))))...))))).))))))).))))))))..

Structure

--        C      A C     ---     a 
  CCUUAUCA UUUUCC G CCAGC   uauag  
  |||||||| |||||| | |||||   ||||| u
  GGAAUAGU AAGAGG C GGUug   auguc  
CG        C      - A     ccu     u 

Annotation confidence High

Genome context

JH419256.1: 3213867-3213929 [+]

Mature pny-miR-184a-5p

• Accession: MIMAT0060264
• Description: Pundamilia nyererei pny-miR-184a-5p mature miRNA
• Sequence: 1 - CCUUAUCACUUUUCCAGCCCAGC - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-184a-3p

• Accession: MIMAT0042859
• Description: Pundamilia nyererei pny-miR-184a-3p mature miRNA
• Sequence: 42 - UGGACGGAGAACUGAUAAGGGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381