Stem-loop pny-mir-100-2

Accession

MI0034802

Description

Pundamilia nyererei pny-mir-100-2 precursor miRNA

Sequence

283701 reads, 24951.0 reads per million, 7 experiments

AACCCGUAGAUCCGAACUUGUGgugacuggcugcaCAAGCUCGUAUCUAUAGGUAUG
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure

--A   C      C   A      guga 
   ACC GUAGAU CGA CUUGUG    c
   ||| |||||| ||| ||||||    u
   UGG UAUCUA GCU GAACac    g
GUA   A      U   C      gucg 

Annotation confidence High

Genome context

JH419269.1: 2046460-2046516 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-100-2

Mature pny-miR-100-5p

• Accession: MIMAT0042860
• Description: Pundamilia nyererei pny-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-100-2-3p

• Accession: MIMAT0060265
• Description: Pundamilia nyererei pny-miR-100-2-3p mature miRNA
• Sequence: 36 - CAAGCUCGUAUCUAUAGGUAUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381