Stem-loop pny-mir-100-1

Accession

MI0034805

Description

Pundamilia nyererei pny-mir-100-1 precursor miRNA

Sequence

294167 reads, 25803.0 reads per million, 7 experiments

AACCCGUAGAUCCGAACUUGUGuuaagugacaccaCAAGCUUGUAUCUACAGGUCUG
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure

--A   C      C   A      uuaa 
   ACC GUAGAU CGA CUUGUG    g
   ||| |||||| ||| ||||||    u
   UGG CAUCUA GUU GAACac    g
GUC   A      U   C      caca 

Annotation confidence High

Genome context

JH419670.1: 108486-108542 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pny-mir-100-1

Mature pny-miR-100-5p

• Accession: MIMAT0042860
• Description: Pundamilia nyererei pny-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-100-1-3p

• Accession: MIMAT0060266
• Description: Pundamilia nyererei pny-miR-100-1-3p mature miRNA
• Sequence: 36 - CAAGCUUGUAUCUACAGGUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381