Stem-loop pny-mir-199-1

Accession

MI0034814

Description

Pundamilia nyererei pny-mir-199-1 precursor miRNA

Sequence

641691 reads, 55863.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAGgaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-C       U        C   ---    ga 
  CCAGUGU CAGACUAC UGU   UCAG  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au 

Annotation confidence High

Genome context

JH419251.1: 676095-676154 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-199-1

Mature pny-miR-199-5p

• Accession: MIMAT0060277
• Description: Pundamilia nyererei pny-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCAG - 25
• Evidence: experimental ; Illumina [1]

Mature pny-miR-199-3p

• Accession: MIMAT0042866
• Description: Pundamilia nyererei pny-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381