Stem-loop pny-mir-199-4

Accession

MI0034816

Description

Pundamilia nyererei pny-mir-199-4 precursor miRNA

Sequence

364690 reads, 31690.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAucaggcugcagcugaACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.((((((.(........).)))))))))))))).)))))))..

Structure

-C       U        C      u agg 
  CCAGUGU CAGACUAC UGUUCA c   c
  ||||||| |||||||| |||||| |    
  GGUUACA GUCUGAUG ACAagu g   u
UU       C        -      c acg 

Annotation confidence High

Genome context

JH419363.1: 469374-469433 [+]

Mature pny-miR-199-5p

• Accession: MIMAT0060277
• Description: Pundamilia nyererei pny-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCA - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-199-3p

• Accession: MIMAT0042866
• Description: Pundamilia nyererei pny-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381