Stem-loop pny-mir-30a-1

Accession

MI0034821

Description

Pundamilia nyererei pny-mir-30a-1 precursor miRNA

Sequence

62770 reads, 5423.0 reads per million, 7 experiments

UGUAAACAUCCUUGACUGGAAGCUgguguuaguuucuggggCUUUCAGUCGGAUGUUUGCAGc
(((((((((((..(((((((((((...(.......)...))))))))))))))))))))))..

Structure

--           UU           ggu uu 
  UGUAAACAUCC  GACUGGAAGCU   g  a
  |||||||||||  |||||||||||   |  g
  ACGUUUGUAGG  CUGACUUUCgg   c  u
cG           --           ggu uu 

Annotation confidence High

Genome context

JH419373.1: 139634-139696 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-30a-1

Mature pny-miR-30a-5p

• Accession: MIMAT0042870
• Description: Pundamilia nyererei pny-miR-30a-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-30a-3p

• Accession: MIMAT0060281
• Description: Pundamilia nyererei pny-miR-30a-3p mature miRNA
• Sequence: 42 - CUUUCAGUCGGAUGUUUGCAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381