Stem-loop pny-let-7a-2

Accession

MI0034822

Description

Pundamilia nyererei pny-let-7a-2 precursor miRNA

Sequence

95067 reads, 8269.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUuuagggucguacccuuccugucagauaaCUAUACAACUUACUGUCUUUCCU
.(((((((((((((((((((((..(((((...)))))...........)))))))))))))))))))))....

Structure

---U                     ---------uu     c 
    GAGGUAGUAGGUUGUAUAGUU           agggu  
    |||||||||||||||||||||           ||||| g
    UUCUGUCAUUCAACAUAUCaa           uccca  
UCCU                     uagacuguccu     u 

Annotation confidence Medium

Genome context

JH419232.1: 4306986-4307058 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7a-2

Mature pny-let-7a-5p

• Accession: MIMAT0042871
• Description: Pundamilia nyererei pny-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-let-7a-2-3p

• Accession: MIMAT0060282
• Description: Pundamilia nyererei pny-let-7a-2-3p mature miRNA
• Sequence: 51 - CUAUACAACUUACUGUCUUUCCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381