Stem-loop pny-let-7d-1

Accession

MI0034835

Description

Pundamilia nyererei pny-let-7d-1 precursor miRNA

Sequence

102845 reads, 9033.0 reads per million, 7 experiments

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaacagcauggagauaaCUGUACAACCUUCUAGCUUUCC
.(((.(((..((((((((((((((.(((..........)))..)).))))))))))))..))).)))...

Structure

--U   G   UU            -  -g   aaua 
   GAG UAG  GGUUGUAUGGUU uc  cau    a
   ||| |||  |||||||||||| ||  |||     
   UUC AUC  CCAACAUGUCaa ag  gua    a
CCU   G   UU            u  ag   cgac 

Annotation confidence High

Genome context

JH419314.1: 78080-78149 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-let-7d-1

Mature pny-let-7d-5p

• Accession: MIMAT0042877
• Description: Pundamilia nyererei pny-let-7d-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-let-7d-3p

• Accession: MIMAT0060295
• Description: Pundamilia nyererei pny-let-7d-3p mature miRNA
• Sequence: 49 - CUGUACAACCUUCUAGCUUUCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381