Stem-loop pny-mir-2188

Accession

MI0034840

Description

Pundamilia nyererei pny-mir-2188 precursor miRNA

Sequence

29146 reads, 2537.0 reads per million, 7 experiments

AAGGUCCAACCUCACAUGUCCUgugcggcugaaggaagGCUGUGUGAGGUCAGACCUAUC
.(((((..((((((((((.(((.(.(.......).)))).))))))))))..)))))...

Structure

--A     CA          U   g g gg 
   AGGUC  ACCUCACAUG CCU u c  c
   |||||  |||||||||| ||| | |  u
   UCCAG  UGGAGUGUGU Gga a g  g
CUA     AC          C   - g aa 

Annotation confidence High

Genome context

JH419211.1: 3980277-3980336 [+]

Mature pny-miR-2188-5p

• Accession: MIMAT0042882
• Description: Pundamilia nyererei pny-miR-2188-5p mature miRNA
• Sequence: 1 - AAGGUCCAACCUCACAUGUCCU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-2188-3p

• Accession: MIMAT0060302
• Description: Pundamilia nyererei pny-miR-2188-3p mature miRNA
• Sequence: 39 - GCUGUGUGAGGUCAGACCUAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381