miRBase entry: pny-mir-125a-2

Stem-loop pny-mir-125a-2


Accession
MI0034841
Description
Pundamilia nyererei pny-mir-125a-2 precursor miRNA


Sequence

297633 reads, 26683.0 reads per million, 7 experiments
UCCCUGAGACCCUUAACCUGUGAggucaaagcaggucACAGGUGAGGUCCUCGGGA
..((((((..(((((.(((((((............))))))))))))..)))))).

Structure
UC      AC     A       gguca 
  CCUGAG  CCUUA CCUGUGA     a
  ||||||  ||||| |||||||      
  GGGCUC  GGAGU GGACAcu     a
-A      CU     -       ggacg 


Annotation confidence High
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Genome context
JH419314.1: 85105-85160 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pny-mir-125a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-125a-5p

Accession MIMAT0042881
Description Pundamilia nyererei pny-miR-125a-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUUAACCUGUGA - 23
Evidence experimental
Illumina [1]

Mature pny-miR-125a-2-3p

Accession MIMAT0060301
Description Pundamilia nyererei pny-miR-125a-2-3p mature miRNA
Sequence 38 - ACAGGUGAGGUCCUCGGGA - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381