Stem-loop pny-mir-153a-2

Accession

MI0034855

Description

Pundamilia nyererei pny-mir-153a-2 precursor miRNA

Sequence

1692 reads, 122.0 reads per million, 7 experiments

UCAUUUUUGUGAUGUUGCAGCUAGuaauauaagcccagUUGCAUAGUCACAAAAGUGAUC
(((((((((((((..(((((((.((.......))..)))))))..)))))))))))))..

Structure

--             GU       -A  aa 
  UCAUUUUUGUGAU  UGCAGCU  Gu  u
  |||||||||||||  |||||||  ||  a
  AGUGAAAACACUG  ACGUUga  cg  u
CU             AU       cc  aa 

Annotation confidence High

Genome context

JH419308.1: 384551-384610 [+]

Mature pny-miR-153a-5p

• Accession: MIMAT0060315
• Description: Pundamilia nyererei pny-miR-153a-5p mature miRNA
• Sequence: 1 - UCAUUUUUGUGAUGUUGCAGCUAG - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-153a-3p

• Accession: MIMAT0042892
• Description: Pundamilia nyererei pny-miR-153a-3p mature miRNA
• Sequence: 39 - UUGCAUAGUCACAAAAGUGAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381