Stem-loop pny-mir-17-1

Accession

MI0034857

Description

Pundamilia nyererei pny-mir-17-1 precursor miRNA

Sequence

6463 reads, 536.0 reads per million, 7 experiments

CAAAGUGCUUACAGUGCAGGUAguacuauggaauaccuaCUGCAGUGGAGGCACUUACAGCA
..(((((((..((.(((((...(((........)))...))))).))..)))))))......

Structure

----CA       UA  G     GUA   cua 
      AAGUGCU  CA UGCAG   gua   u
      |||||||  || |||||   |||    
      UUCACGG  GU ACGUC   cau   g
ACGACA       AG  G     auc   aag 

Annotation confidence High

Genome context

JH419216.1: 2882322-2882383 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pny-mir-17-1

Mature pny-miR-17-5p

• Accession: MIMAT0042893
• Description: Pundamilia nyererei pny-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-17-1-3p

• Accession: MIMAT0060317
• Description: Pundamilia nyererei pny-miR-17-1-3p mature miRNA
• Sequence: 40 - CUGCAGUGGAGGCACUUACAGCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381