Stem-loop pny-mir-125b-1

Accession

MI0034862

Description

Pundamilia nyererei pny-mir-125b-1 precursor miRNA

Sequence

110163 reads, 9727.0 reads per million, 7 experiments

UCCCUGAGACCCUAACUUGUGAcguuuugcugugaugugcACGGGUUGGGUUCUUGGGAGCU
((((.((((.((((((((((((((((.......))))).))))))))))).))))))))...

Structure

---    U    C           -     uu 
   UCCC GAGA CCUAACUUGUG Acguu  g
   |||| |||| ||||||||||| |||||  c
   AGGG UUCU GGGUUGGGCAc uguag  u
UCG    -    U           g     ug 

Annotation confidence High

Genome context

JH419269.1: 2041223-2041284 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-125b-1

Mature pny-miR-125b-5p

• Accession: MIMAT0042890
• Description: Pundamilia nyererei pny-miR-125b-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUAACUUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-125b-1-3p

• Accession: MIMAT0060313
• Description: Pundamilia nyererei pny-miR-125b-1-3p mature miRNA
• Sequence: 41 - ACGGGUUGGGUUCUUGGGAGCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381