miRBase entry: pny-mir-133-1

Stem-loop pny-mir-133-1


Accession
MI0034872
Description
Pundamilia nyererei pny-mir-133-1 precursor miRNA


Sequence

8329 reads, 669.0 reads per million, 7 experiments
GCUGGUCAAACGGAACCAAGUCAGguguuucugugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((.(......).)))..)))))).)).))..)))))).

Structure
-      CA  C  A      --   G ug 
 GCUGGU  AA GG ACCAAG  UCA g  u
 ||||||  || || ||||||  ||| |   
 CGACCA  UU CC UGGUUU  agu u  u
U      AC  C  C      gg   g cu 


Annotation confidence High
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Genome context
JH419263.1: 436274-436332 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pny-mir-133-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-133-1-5p

Accession MIMAT0060327
Description Pundamilia nyererei pny-miR-133-1-5p mature miRNA
Sequence 1 - GCUGGUCAAACGGAACCAAGUCAG - 24
Evidence experimental
Illumina [1]

Mature pny-miR-133-3p

Accession MIMAT0042901
Description Pundamilia nyererei pny-miR-133-3p mature miRNA
Sequence 39 - UUUGGUCCCCUUCAACCAGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381