Stem-loop pny-mir-30d

Accession

MI0034879

Description

Pundamilia nyererei pny-mir-30d precursor miRNA

Literature search

1 open access papers mention pny-mir-30d
(3 sentences)

Sequence

12035 reads, 1019.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCAGCUguuauugauugccacagaggCUGAGAGGAGGUUGUUUACUUG
.(((((((.(((...(((((((.....((.....))....)))))))...))).)))))))...

Structure

--U       U   ACA       guuau  a 
   GUAAACA CCU   CUCAGCU     ug u
   ||||||| |||   |||||||     || u
   CAUUUGU GGA   GAGUCgg     ac g
GUU       U   GGA       -agac  c 

Annotation confidence High

Genome context

JH419706.1: 201055-201118 [+]

Mature pny-miR-30d-5p

• Accession: MIMAT0042905
• Description: Pundamilia nyererei pny-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-30d-3p

• Accession: MIMAT0060333
• Description: Pundamilia nyererei pny-miR-30d-3p mature miRNA
• Sequence: 43 - CUGAGAGGAGGUUGUUUACUUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381