Stem-loop pny-mir-20a-2

Accession

MI0034884

Description

Pundamilia nyererei pny-mir-20a-2 precursor miRNA

Sequence

5472 reads, 457.0 reads per million, 7 experiments

UAAAGUGCUUAUAGUGCAGGUAGucuucuuacuguuuaaauucuACUGCAAUGUGAGCACUUCAAGU
..(((((((((((.(((((.(((...................)))))))).))))))))))).....

Structure

---UA           G     G   ucuucuua 
     AAGUGCUUAUA UGCAG UAG        c
     ||||||||||| ||||| |||        u
     UUCACGAGUGU ACGUC Auc        g
UGAAC           A     -   uuaaauuu 

Annotation confidence High

Genome context

JH419214.1: 5902505-5902571 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pny-mir-20a-2

Mature pny-miR-20a-5p

• Accession: MIMAT0042908
• Description: Pundamilia nyererei pny-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-20a-2-3p

• Accession: MIMAT0060336
• Description: Pundamilia nyererei pny-miR-20a-2-3p mature miRNA
• Sequence: 45 - ACUGCAAUGUGAGCACUUCAAGU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381