Stem-loop pny-mir-107

Accession

MI0034885

Description

Pundamilia nyererei pny-mir-107 precursor miRNA

Literature search

1 open access papers mention pny-mir-107
(1 sentences)

Sequence

3348 reads, 283.0 reads per million, 7 experiments

AGCUUCUUUACAGUGUUGCCUUGUggcauggcgaucaAGCAGCAUUGUACAGGGCUAUC
((((.((.(((((((((((.((((.((...)).).)))))))))))))).))))))...

Structure

---    U  U           C   - g  a 
   AGCU CU UACAGUGUUGC UUG U gc  
   |||| || ||||||||||| ||| | || u
   UCGG GA AUGUUACGACG Aac a cg  
CUA    -  C           -   u g  g 

Annotation confidence High

Genome context

JH419259.1: 3180822-3180880 [+]

Mature pny-miR-107-5p

• Accession: MIMAT0060337
• Description: Pundamilia nyererei pny-miR-107-5p mature miRNA
• Sequence: 1 - AGCUUCUUUACAGUGUUGCCUUGU - 24
• Evidence: experimental ; Illumina [1]

Mature pny-miR-107-3p

• Accession: MIMAT0042909
• Description: Pundamilia nyererei pny-miR-107-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381