Stem-loop pny-mir-138-1

Accession

MI0034892

Description

Pundamilia nyererei pny-mir-138-1 precursor miRNA

Sequence

1169 reads, 94.0 reads per million, 7 experiments

AGCUGGUGUUGUGAAUCAGGCCGaugacacacaccucuuauaacccgGCUAUUUCACAACACCAGGGU
..(((((((((((((...(((((......................)))))..)))))))))))))...

Structure

-AG             UCA     augacacaca 
   CUGGUGUUGUGAA   GGCCG          c
   |||||||||||||   |||||           
   GACCACAACACUU   UCGgc          c
UGG             -UA     ccaauauucu 

Annotation confidence High

Genome context

JH419265.1: 86593-86660 [+]

Mature pny-miR-138-5p

• Accession: MIMAT0042916
• Description: Pundamilia nyererei pny-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-138-1-3p

• Accession: MIMAT0060343
• Description: Pundamilia nyererei pny-miR-138-1-3p mature miRNA
• Sequence: 48 - GCUAUUUCACAACACCAGGGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381