Stem-loop pny-mir-194a

Accession

MI0034906

Description

Pundamilia nyererei pny-mir-194a precursor miRNA

Sequence

1281 reads, 105.0 reads per million, 7 experiments

UGUAACAGCAACUCCAUGUGGAagcugugucaguuCCAGUGGAGGUGCUGUUACUUG
.(((((((((.((((((.(((((.(((...)))))))))))))).)))))))))...

Structure

--U         A      G     g   u 
   GUAACAGCA CUCCAU UGGAa cug  
   ||||||||| |||||| ||||| ||| g
   CAUUGUCGU GAGGUG ACCuu gac  
GUU         G      -     -   u 

Annotation confidence High

Genome context

JH419454.1: 530382-530438 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-194a

Mature pny-miR-194a-5p

• Accession: MIMAT0042927
• Description: Pundamilia nyererei pny-miR-194a-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-194a-3p

• Accession: MIMAT0060353
• Description: Pundamilia nyererei pny-miR-194a-3p mature miRNA
• Sequence: 36 - CCAGUGGAGGUGCUGUUACUUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381