Stem-loop pny-mir-93

Accession

MI0034907

Description

Pundamilia nyererei pny-mir-93 precursor miRNA

Sequence

2843 reads, 240.0 reads per million, 7 experiments

AAAAGUGCUGUUUGUGCAGGUAGcggucauccaccuACUGCAAAACCAGCACUUCAGG
..((((((((.((.(((((.(((.((....))..)))))))).)).))))))))....

Structure

--AA        U  G     G   -c  u 
    AAGUGCUG UU UGCAG UAG  gg c
    |||||||| || ||||| |||  ||  
    UUCACGAC AA ACGUC Auc  cc a
GGAC        C  A     -   ca  u 

Annotation confidence High

Genome context

JH419213.1: 69939-69996 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from pny-mir-93

Mature pny-miR-93-5p

• Accession: MIMAT0042928
• Description: Pundamilia nyererei pny-miR-93-5p mature miRNA
• Sequence: 1 - AAAAGUGCUGUUUGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-93-3p

• Accession: MIMAT0060354
• Description: Pundamilia nyererei pny-miR-93-3p mature miRNA
• Sequence: 37 - ACUGCAAAACCAGCACUUCAGG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381