miRBase entry: pny-mir-96-1

Stem-loop pny-mir-96-1


Accession
MI0034910
Description
Pundamilia nyererei pny-mir-96-1 precursor miRNA


Sequence


UUUGGCACUAGCACAUUUUUGCUucuguauauauacuuugagcaauuauguguagugccaauau
.(((((((((.(((((..((((((..(((....)))...))))))..))))))))))))))...

Structure
--U         G     UU      -cu   u 
   UUGGCACUA CACAU  UUGCUu   gua a
   ||||||||| |||||  ||||||   |||  
   aaccgugau gugua  aacgag   cau u
uau         -     uu      uuu   a 


Annotation confidence Low
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Genome context
JH419257.1: 481491-481554 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pny-mir-96-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-96

Accession MIMAT0042931
Description Pundamilia nyererei pny-miR-96 mature miRNA
Sequence 1 - UUUGGCACUAGCACAUUUUUGCU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381