Stem-loop pny-mir-139

Accession

MI0034916

Description

Pundamilia nyererei pny-mir-139 precursor miRNA

Sequence

8081 reads, 718.0 reads per million, 7 experiments

UCUACAGUGCAUGUGUCUCCAGUauguuagugaugcuacUGGAGACCCAGCUCUGUUGGAAu
(((((((.((.((.((((((((((.((.......)))))))))))).)))).))).))))..

Structure

--    -   U  A  U          u  ua 
  UCUA CAG GC UG GUCUCCAGUa gu  g
  |||| ||| || || |||||||||| ||  u
  AGGU GUC CG AC CAGAGGUcau cg  g
uA    U   U  -  C          -  ua 

Annotation confidence High

Genome context

JH419390.1: 762678-762739 [-]

Mature pny-miR-139-5p

• Accession: MIMAT0042936
• Description: Pundamilia nyererei pny-miR-139-5p mature miRNA
• Sequence: 1 - UCUACAGUGCAUGUGUCUCCAGU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-139-3p

• Accession: MIMAT0060362
• Description: Pundamilia nyererei pny-miR-139-3p mature miRNA
• Sequence: 40 - UGGAGACCCAGCUCUGUUGGAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381