Stem-loop pny-mir-7-1

Accession

MI0034917

Description

Pundamilia nyererei pny-mir-7-1 precursor miRNA

Sequence

24028 reads, 2054.0 reads per million, 7 experiments

UGGAAGACUAGUGAUUUUGUUGUuuuuaguuagagcaaccgaCAACAAAUCACAGUCUGCCAAA
(((.(((((.(((((((.((((((....((....))....)))))))))))))))))).)))..

Structure

--   A     A       U      uuua  u 
  UGG AGACU GUGAUUU GUUGUu    gu a
  ||| ||||| ||||||| ||||||    ||  
  ACC UCUGA CACUAAA CAACag    cg g
AA   G     -       -      ccaa  a 

Annotation confidence High

Genome context

JH419211.1: 1953282-1953345 [-]

Mature pny-miR-7-5p

• Accession: MIMAT0042937
• Description: Pundamilia nyererei pny-miR-7-5p mature miRNA
• Sequence: 1 - UGGAAGACUAGUGAUUUUGUUGU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-7-1-3p

• Accession: MIMAT0060363
• Description: Pundamilia nyererei pny-miR-7-1-3p mature miRNA
• Sequence: 43 - CAACAAAUCACAGUCUGCCAAA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381