Stem-loop pny-mir-129-1

Accession

MI0034918

Description

Pundamilia nyererei pny-mir-129-1 precursor miRNA

Sequence

25606 reads, 2246.0 reads per million, 7 experiments

CUUUUUGCGGUCUGGGCUUGCuguucauaacuauuaaucugggAAGCCCUUACCCCAAAAAGCAU
(((((((.(((..((((((.((..................)).))))))..))).)))))))...

Structure

---       C   CU      G  guucauaa 
   CUUUUUG GGU  GGGCUU Cu        c
   ||||||| |||  |||||| ||         
   GAAAAAC CCA  CCCGAA gg        u
UAC       C   UU      g  ucuaauua 

Annotation confidence High

Genome context

JH419248.1: 2123791-2123855 [-]

Mature pny-miR-129-5p

• Accession: MIMAT0042938
• Description: Pundamilia nyererei pny-miR-129-5p mature miRNA
• Sequence: 1 - CUUUUUGCGGUCUGGGCUUGC - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-129-3p

• Accession: MIMAT0060366
• Description: Pundamilia nyererei pny-miR-129-3p mature miRNA
• Sequence: 44 - AAGCCCUUACCCCAAAAAGCAU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381