Stem-loop pny-mir-132-1

Accession

MI0034931

Description

Pundamilia nyererei pny-mir-132-1 precursor miRNA

Sequence

308 reads, 25.0 reads per million, 7 experiments

ACCGUGGCAUUAGAUUGUUACUGuaguaacagcaccaguggUAACAGUCUACAGCCAUGGUC
((((((((..((((((((((((((.((....))))....))))))))))))..)))))))).

Structure

-        AU            ----  a  a 
 ACCGUGGC  UAGAUUGUUACU    Gu gu a
 ||||||||  ||||||||||||    || ||  
 UGGUACCG  AUCUGACAAUgg    ca cg c
C        AC            ugac  -  a 

Annotation confidence Not enough data

Genome context

JH419296.1: 1546322-1546383 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-132-1

Mature pny-miR-132-5p

• Accession: MIMAT0060394
• Description: Pundamilia nyererei pny-miR-132-5p mature miRNA
• Sequence: 1 - ACCGUGGCAUUAGAUUGUUACUG - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-132-3p

• Accession: MIMAT0042944
• Description: Pundamilia nyererei pny-miR-132-3p mature miRNA
• Sequence: 42 - UAACAGUCUACAGCCAUGGUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381