Stem-loop pny-mir-212-1

Accession

MI0034934

Description

Pundamilia nyererei pny-mir-212-1 precursor miRNA

Sequence

970 reads, 83.0 reads per million, 7 experiments

ACCUUGGCUCUAGACUGCUUACUgcuaaaacuccuccaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((...................))))))))))))).))))).))..

Structure

-A  U     C       C      cuaaaacu 
  CC UGGCU UAGACUG UUACUg        c
  || ||||| ||||||| ||||||        c
  GG ACUGA AUCUGAC AAUgac        u
UC  U     C       -      augaaacc 

Annotation confidence High

Genome context

JH419296.1: 1546046-1546112 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-212-1

Mature pny-miR-212-1-5p

• Accession: MIMAT0060375
• Description: Pundamilia nyererei pny-miR-212-1-5p mature miRNA
• Sequence: 1 - ACCUUGGCUCUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-212-3p

• Accession: MIMAT0060414
• Description: Pundamilia nyererei pny-miR-212-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381