Stem-loop pny-mir-219b-1

Accession

MI0034939

Description

Pundamilia nyererei pny-mir-219b-1 precursor miRNA

Sequence

654 reads, 57.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUgcaugugcuuuugugaaaccaGGAGUUGUGGAUGGACAUCACG
((((.(((((..(((((((((((....(((....)))....)))))))))))..)))))))))..

Structure

--    U     AA           caug   u 
  UGAU GUCCA  CGCAAUUCUUg    ugc u
  |||| |||||  |||||||||||    |||  
  ACUA CAGGU  GUGUUGAGGac    gug u
GC    -     AG           caaa   u 

Annotation confidence High

Genome context

JH419514.1: 234169-234233 [-]

Mature pny-miR-219b-5p

• Accession: MIMAT0042953
• Description: Pundamilia nyererei pny-miR-219b-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-219b-1-3p

• Accession: MIMAT0060379
• Description: Pundamilia nyererei pny-miR-219b-1-3p mature miRNA
• Sequence: 44 - GGAGUUGUGGAUGGACAUCACG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381