Stem-loop pny-mir-23a-1

Accession

MI0034942

Description

Pundamilia nyererei pny-mir-23a-1 precursor miRNA

Sequence

3813 reads, 328.0 reads per million, 7 experiments

gaauuccuggcagagugauuuUUUUUUAACUAGAGGACUGAAUCACAUUGCCAGGGAUUUCC
(((((((((((((.(((((((.(((((.....)))))..))))))).)))))))))))))..

Structure

--             a       -U     A 
  gaauuccuggcag gugauuu  UUUUU A
  ||||||||||||| |||||||  ||||| C
  UUUAGGGACCGUU CACUAAG  AGGAG U
CC             A       UC     A 

Annotation confidence Low

Genome context

JH419264.1: 1065127-1065188 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-23a-1

Mature pny-miR-23a-5p

• Accession: MIMAT0061612
• Description: Pundamilia nyererei pny-miR-23a-5p mature miRNA
• Sequence: 22 - UUUUUUAACUAGAGGACUGAA - 42
• Evidence: experimental ; Illumina [1]

Mature pny-miR-23a-1-5p

• Accession: MIMAT0060381
• Description: Pundamilia nyererei pny-miR-23a-1-5p mature miRNA
• Sequence: 22 - UUUUUUAACUAGAGGACUGAA - 42
• Evidence: experimental ; Illumina [1]

Mature pny-miR-23a-3p

• Accession: MIMAT0042955
• Description: Pundamilia nyererei pny-miR-23a-3p mature miRNA
• Sequence: 42 - AUCACAUUGCCAGGGAUUUCC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381