Stem-loop pny-mir-204-3

Accession

MI0034955

Description

Pundamilia nyererei pny-mir-204-3 precursor miRNA

Sequence

39099 reads, 3277.0 reads per million, 7 experiments

UUCCCUUUGUCAUCCUAUGCCUggauuaauacaaaagggGCUGGGAAGGCAAAGGGACGGc
.((((((((((.(((((.((((...............))))))))).))))))))))....

Structure

---U          A     U    ggauua 
    UCCCUUUGUC UCCUA GCCU      a
    |||||||||| ||||| ||||      u
    AGGGAAACGG AGGGU CGgg      a
cGGC          A     -    gaaaac 

Annotation confidence Medium

Genome context

JH419238.1: 362534-362594 [-]

Mature pny-miR-204-5p

• Accession: MIMAT0042863
• Description: Pundamilia nyererei pny-miR-204-5p mature miRNA
• Sequence: 1 - UUCCCUUUGUCAUCCUAUGCCU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-204-3-3p

• Accession: MIMAT0060271
• Description: Pundamilia nyererei pny-miR-204-3-3p mature miRNA
• Sequence: 40 - GCUGGGAAGGCAAAGGGACGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381