Stem-loop pny-mir-219b-2

Accession

MI0034958

Description

Pundamilia nyererei pny-mir-219b-2 precursor miRNA

Sequence

730 reads, 66.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUguauuuaauauccauauccaGGAGUUGUGGCUGGACAUCAUG
((((.(((((..(((((((((((.((...........)).)))))))))))..)))))))))..

Structure

--    U     AA           u  uuaa 
  UGAU GUCCA  CGCAAUUCUUg au    u
  |||| |||||  ||||||||||| ||    a
  ACUA CAGGU  GUGUUGAGGac ua    u
GU    -     CG           c  uacc 

Annotation confidence High

Genome context

JH419289.1: 562456-562519 [-]

Mature pny-miR-219b-5p

• Accession: MIMAT0042953
• Description: Pundamilia nyererei pny-miR-219b-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-219b-2-3p

• Accession: MIMAT0060380
• Description: Pundamilia nyererei pny-miR-219b-2-3p mature miRNA
• Sequence: 43 - GGAGUUGUGGCUGGACAUCAUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381