Stem-loop pny-mir-23c

Accession

MI0034978

Description

Pundamilia nyererei pny-mir-23c precursor miRNA

Sequence

52204 reads, 4582.0 reads per million, 7 experiments

UGUGUCUCUGGCAAGAUGAUUUgggccacaaaguugaaAUCACAUUGCCAGAGACUACUG
.(((((((((((((..((((((.(((......))).))))))..))))))))))).))..

Structure

-U  -           GA      g   ca 
  GU GUCUCUGGCAA  UGAUUU ggc  c
  || |||||||||||  |||||| |||   
  CA CAGAGACCGUU  ACUAaa uug  a
GU  U           AC      g   aa 

Annotation confidence High

Genome context

JH419221.1: 2778030-2778089 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-23c

Mature pny-miR-23c-5p

• Accession: MIMAT0060390
• Description: Pundamilia nyererei pny-miR-23c-5p mature miRNA
• Sequence: 1 - UGUGUCUCUGGCAAGAUGAUUU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-23c-3p

• Accession: MIMAT0042974
• Description: Pundamilia nyererei pny-miR-23c-3p mature miRNA
• Sequence: 39 - AUCACAUUGCCAGAGACUACUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381