Stem-loop pny-mir-24b

Accession

MI0034982

Description

Pundamilia nyererei pny-mir-24b precursor miRNA

Sequence

13558 reads, 1176.0 reads per million, 7 experiments

UGCCUACUGAACUGGUAUCAGUguuauaccugaaaacUGGCUCAGUUCAGCAGGAACAG
..(((.(((((((((..(((((.............))))).))))))))).))).....

Structure

---UG   A         UA     guuau 
     CCU CUGAACUGG  UCAGU     a
     ||| |||||||||  |||||     c
     GGA GACUUGACU  GGUca     c
GACAA   C         -C     aaagu 

Annotation confidence High

Genome context

JH419388.1: 1077952-1078010 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-24b

Mature pny-miR-24b-5p

• Accession: MIMAT0042978
• Description: Pundamilia nyererei pny-miR-24b-5p mature miRNA
• Sequence: 1 - UGCCUACUGAACUGGUAUCAGU - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-24b-3p

• Accession: MIMAT0060393
• Description: Pundamilia nyererei pny-miR-24b-3p mature miRNA
• Sequence: 38 - UGGCUCAGUUCAGCAGGAACAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381