Stem-loop pny-mir-196b

Accession

MI0034984

Description

Pundamilia nyererei pny-mir-196b precursor miRNA

Sequence

5087 reads, 437.0 reads per million, 7 experiments

UAGGUAGUCUCAUGUUGUUGGGCuauauuauuucucCCACAACACAAAACUGCCUUGA
.(((((((....((((((.(((.............)))))))))....)))))))...

Structure

--U       CUCA      U   Cuaua 
   AGGUAGU    UGUUGU GGG     u
   |||||||    |||||| |||     u
   UCCGUCA    ACAACA CCc     a
AGU       AAAC      -   ucuuu 

Annotation confidence High

Genome context

JH419289.1: 1086846-1086903 [+]

Mature pny-miR-196b-5p

• Accession: MIMAT0042980
• Description: Pundamilia nyererei pny-miR-196b-5p mature miRNA
• Sequence: 1 - UAGGUAGUCUCAUGUUGUUGGGC - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-196b-3p

• Accession: MIMAT0060395
• Description: Pundamilia nyererei pny-miR-196b-3p mature miRNA
• Sequence: 37 - CCACAACACAAAACUGCCUUGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381