Stem-loop pny-mir-216a

Accession

MI0034986

Description

Pundamilia nyererei pny-mir-216a precursor miRNA

Sequence

5803 reads, 505.0 reads per million, 7 experiments

AAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucuCACAAUGGCCUCUGGGAUUAUG
.((((((((..(((...((((((..((.........)).))))))...))).))))))))...

Structure

--A        CU   AAC      uc  uca 
   AAUCUCAG  GGC   UGUGAg  gu   c
   ||||||||  |||   ||||||  ||   u
   UUAGGGUC  CCG   ACACuc  cg   a
GUA        -U   GUA      -u  ucg 

Annotation confidence High

Genome context

JH419354.1: 1380204-1380266 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-216a

Mature pny-miR-216a-5p

• Accession: MIMAT0042982
• Description: Pundamilia nyererei pny-miR-216a-5p mature miRNA
• Sequence: 1 - AAAUCUCAGCUGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-216a-3p

• Accession: MIMAT0060397
• Description: Pundamilia nyererei pny-miR-216a-3p mature miRNA
• Sequence: 42 - CACAAUGGCCUCUGGGAUUAUG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381