Stem-loop pny-mir-31

Accession

MI0034987

Description

Pundamilia nyererei pny-mir-31 precursor miRNA

Sequence

2118 reads, 180.0 reads per million, 7 experiments

AGGCAAGAUGUUGGCAUAGCUGUugaguugaaaacccUGCUAUGCCGACAAAUUGCCAUC
.(((((..((((((((((((.(((........)))...))))))))))))..)))))...

Structure

--A     GA            --U   gag 
   GGCAA  UGUUGGCAUAGC   GUu   u
   |||||  ||||||||||||   |||    
   CCGUU  ACAGCCGUAUCG   caa   u
CUA     AA            Ucc   aag 

Annotation confidence High

Genome context

JH419549.1: 91560-91619 [-]

Mature pny-miR-31-5p

• Accession: MIMAT0042983
• Description: Pundamilia nyererei pny-miR-31-5p mature miRNA
• Sequence: 1 - AGGCAAGAUGUUGGCAUAGCUGU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-31-3p

• Accession: MIMAT0060398
• Description: Pundamilia nyererei pny-miR-31-3p mature miRNA
• Sequence: 38 - UGCUAUGCCGACAAAUUGCCAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381