Stem-loop pny-mir-194b

Accession

MI0034995

Description

Pundamilia nyererei pny-mir-194b precursor miRNA

Sequence

219 reads, 18.0 reads per million, 7 experiments

UGUAACAGCAUCUCCAUAUGGAaaaacuguggcuuCCAGUGGAGCUGCUGUUAUCUG
.(((((((((.((((((.(((((..........))))))))))).)))))))))...

Structure

--U         U      A     aaac 
   GUAACAGCA CUCCAU UGGAa    u
   ||||||||| |||||| |||||     
   UAUUGUCGU GAGGUG ACCuu    g
GUC         C      -     cggu 

Annotation confidence High

Genome context

JH419213.1: 4919009-4919065 [+]

Mature pny-miR-194b-5p

• Accession: MIMAT0042990
• Description: Pundamilia nyererei pny-miR-194b-5p mature miRNA
• Sequence: 1 - UGUAACAGCAUCUCCAUAUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature pny-miR-194b-3p

• Accession: MIMAT0060404
• Description: Pundamilia nyererei pny-miR-194b-3p mature miRNA
• Sequence: 36 - CCAGUGGAGCUGCUGUUAUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381