Stem-loop pny-mir-551

Accession

MI0034996

Description

Pundamilia nyererei pny-mir-551 precursor miRNA

Sequence

2663 reads, 237.0 reads per million, 7 experiments

GAAACCAAGUGUGGGUGUGGCCUgaaaaagaaauaugGCGACCCAUCCUUUGUUUCUG
(((((.(((.((((((...(((..............))).)))))).))).)))))..

Structure

--     C   U      GUG   Ugaaaa 
  GAAAC AAG GUGGGU   GCC      a
  ||||| ||| ||||||   |||       
  CUUUG UUC UACCCA   CGg      g
GU     U   C      --G   uauaaa 

Annotation confidence High

Genome context

JH419513.1: 44873-44930 [+]

Mature pny-miR-551-5p

• Accession: MIMAT0060405
• Description: Pundamilia nyererei pny-miR-551-5p mature miRNA
• Sequence: 1 - GAAACCAAGUGUGGGUGUGGCCU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-551-3p

• Accession: MIMAT0042991
• Description: Pundamilia nyererei pny-miR-551-3p mature miRNA
• Sequence: 38 - GCGACCCAUCCUUUGUUUCUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381